mail inquiry Inquiry

Fungal Resequencing Analysis

Fungal Resequencing Analysis Online Inquiry

A leader in fungal resequencing data analysis, CD Genomics uses bioinformatics to help you explore fungal large-scale sequencing data information. Our unique data analysis skills and advanced software will exceed clients' expectations on personalized laboratory data analysis and provide the easy-to-interpret data analysis reports.

Introduction of Fungal Resequencing

Fungal genome resequencing is the sequencing of known genomes and the analysis of individual or population samples to find fungal single nucleotide polymorphisms (SNPs), insertion, deletion and other variants, amplifying the single reference genome information into the genetic characteristics of biological groups in the cheapest way. Through high-throughput sequencing, the site differences and structural variations between gene sequences are detected, and the causes of differences in traits are found at the genome-wide level.

Fungal genome resequencing bioinformatic analysis can be used for SNP and InDel detection, genotype diversity analysis, recombination and linkage disequilibrium analysis, population structure analysis, evolution and origin node estimation and genome-wide association analysis. The study of fungal genome not only has a far-reaching impact on revealing the genetic basis and molecular mechanism of various special characters of fungi and exploring the evolutionary mechanism of eukaryotes, but also has important value in disease prevention and control, nutrition and health, bioenergy and other application fields.

Relationships between genetic diversity and genome function.Fig 1. Relationships between genetic diversity and genome function. (Jeffares, D., et al. ,2015)

Application Field

Group structure analysis

Pathogen analysis of pathogenic fungi

Functional gene mining for edible/medicinal fungi

Fungal evolution

Law of spread

Advantages of CD Genomics

Strict quality control management

Professional analysis team

Rich project experience

High quality project service

Cost-effective

CD Genomics Data Analysis Pipeline

CD Genomics fungal genome resequencing data analysis pipeline - CD Genomics.

Bioinformatics Analysis Content

CD Genomics has a complete, efficient, sensitive and highly accurate fungal genome resequencing data analysis pipeline and rich experience in fungal resequencing data analysis. We provide clients with comprehensive and accurate genome analysis results.

Data preprocessing Data quality control
Data statistics
Remove adapter
Remove low quality reads
Genetic diversity and genome function Map to reference genome
SNP detection
Indel detection
Genotype diversity analysis
Restructuring and linkage disequilibrium analysis
Evolutionary analysis Group structure analysis
Evolution and origin node estimation
Genome-wide association analysis

If you need custom fungal genome resequencing data analysis, such as genetic diversity and genome function analysis, variation in transposon insertions and gene content analysis, and distribution of recombination analysis, we will design an analysis strategy tailored to your project. For analysis content, price, cycle, or other questions, please click online inquiry.

How It Works

CD Genomics is a professional bioinformatics service provider with years of experience in NGS and long read sequencing (PacBio SMRT and Oxford Nanopore platforms) data analysis, integrated analysis services, database construction and other bioinformatics solutions.

How It Works

CD Genomics has successfully conducted fungal genome resequencing data analysis on a variety of fungus, combined with rich project experience, strict data quality control and professional analysis process, to ensure that the project is carried out accurately and quickly. Please feel free to contact us for more information and a detailed quote.

Reference

  1. Jeffares, D., et al. The genomic and phenotypic diversity of Schizosaccharomyces pombe. Nat Genet 47, 235–241 (2015).
* For Research Use Only. Not for use in diagnostic procedures.
return-top
Refresh to display the verification code
close
Online Inquiry