A leader in fungal resequencing data analysis, CD Genomics uses bioinformatics to help you explore fungal large-scale sequencing data information. Our unique data analysis skills and advanced software will exceed clients' expectations on personalized laboratory data analysis and provide the easy-to-interpret data analysis reports.
Introduction of Fungal Resequencing
Fungal genome resequencing is the sequencing of known genomes and the analysis of individual or population samples to find fungal single nucleotide polymorphisms (SNPs), insertion, deletion and other variants, amplifying the single reference genome information into the genetic characteristics of biological groups in the cheapest way. Through high-throughput sequencing, the site differences and structural variations between gene sequences are detected, and the causes of differences in traits are found at the genome-wide level.
Fungal genome resequencing bioinformatic analysis can be used for SNP and InDel detection, genotype diversity analysis, recombination and linkage disequilibrium analysis, population structure analysis, evolution and origin node estimation and genome-wide association analysis. The study of fungal genome not only has a far-reaching impact on revealing the genetic basis and molecular mechanism of various special characters of fungi and exploring the evolutionary mechanism of eukaryotes, but also has important value in disease prevention and control, nutrition and health, bioenergy and other application fields.
Fig 1. Relationships between genetic diversity and genome function. (Jeffares, D., et al. ,2015)
Application Field
Group structure analysis
Pathogen analysis of pathogenic fungi
Functional gene mining for edible/medicinal fungi
Fungal evolution
Law of spread
Advantages of CD Genomics
Strict quality control management
Professional analysis team
Rich project experience
High quality project service
Cost-effective
CD Genomics Data Analysis Pipeline
Bioinformatics Analysis Content
CD Genomics has a complete, efficient, sensitive and highly accurate fungal genome resequencing data analysis pipeline and rich experience in fungal resequencing data analysis. We provide clients with comprehensive and accurate genome analysis results.
| Data preprocessing |
Data quality control |
| Data statistics |
| Remove adapter |
| Remove low quality reads |
| Genetic diversity and genome function |
Map to reference genome |
| SNP detection |
| Indel detection |
| Genotype diversity analysis |
| Restructuring and linkage disequilibrium analysis |
| Evolutionary analysis |
Group structure analysis |
| Evolution and origin node estimation |
| Genome-wide association analysis |
If you need custom fungal genome resequencing data analysis, such as genetic diversity and genome function analysis, variation in transposon insertions and gene content analysis, and distribution of recombination analysis, we will design an analysis strategy tailored to your project. For analysis content, price, cycle, or other questions, please click online inquiry.
How It Works
CD Genomics is a high-tech company specializing in multiomic data analysis. We provide services such as project design, data analysis, and database construction. With a focus on developing breakthrough products and services, we are a pioneer in the biotechnology industry, serving researchers and partners worldwide.
CD Genomics has successfully conducted fungal genome resequencing data analysis on a variety of fungus, combined with rich project experience, strict data quality control and professional analysis process, to ensure that the project is carried out accurately and quickly. Please feel free to contact us for more information and a detailed quote.
Reference
- Jeffares, D., et al. The genomic and phenotypic diversity of Schizosaccharomyces pombe. Nat Genet 47, 235–241 (2015).
