CD Genomics provides service on whole genome de novo sequencing data analysis. We use bioinformatics to help you explore the genome of new species. Our unique skills in data analysis can meet customers' personalized data analysis needs and provide the most comprehensive data analysis.
What Is De Novo Sequencing Data Analysis?
As its name implies, de novo sequencing data analysis analyzes the de novo sequencing data. de novo sequencing refers to sequencing a novel genome where there is no reference sequence available for alignment. Sequence reads are assembled as contigs, and the coverage quality of de novo sequence data depends on the size and continuity of the contigs (i.e., the number of gaps in the data).
A complete and accurate genome sequence is essential to the genomics study of new species and the investigation of complex structural genomic changes in wild relatives compared to published cultivar genome sequences.
With de novo sequencing data analysis, the first genome map for a species is generated, providing a valuable reference sequence for phylogenetic studies, analysis of species diversity, mapping of specific traits and genetic markers, and other genomics research.
We Can Help Our Clients With
◎ Generates accurate reference sequences, even for complex or polyploid genomes;
◎ Provides useful information for mapping genomes of novel organisms or finishing genomes of known organisms;
◎ Clarifies highly similar or repetitive regions for accurate de novo assembly;
◎ Identifies structural variants and complex rearrangements, such as deletions, inversions, or translocations.
CD Genomics Data Analysis Pipeline
What We Offer
Standard analysis content
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Genome Survey
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K-mer analysis and genome size estimation
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Estimation of heterozygosity
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Preliminary assembly
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GC-Depth distribution analysis
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Genome assembly
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Assembly
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GC-Depth distribution analysis
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GC content distribution analysis
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In-depth sequencing analysis
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Assessment of autosomal area coverage
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Assessment of gene area coverage (requires customer to provide EST or transcriptome sequence)
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Genome annotation
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repeat comment
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Gene prediction
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Gene function annotation
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ncRNA annotation
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Advanced analysis
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Evolutionary analysis
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Gene cluster analysis (also called gene family identification, animal TreeFam; plant OrthoMCL)
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Species phylogenetic tree construction
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Species divergence time estimation (requires calibration time information)
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Genomic collinear analysis
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Whole genome replication analysis (animal WGAC; plant WGD)
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Customized Data Analysis
The customized information analysis content can be negotiated and determined according to the needs of customers.
How It Works
CD Genomics is a high-tech company specializing in multiomic data analysis. We provide services such as project design, data analysis, and database construction. With a focus on developing breakthrough products and services, we are a pioneer in the biotechnology industry, serving researchers and partners worldwide.
CD Genomics has over a decade of experience in whole genome de novo sequencing data analysis. We also have significant expertise in analyzing data from genomics, and other projects, to help drive research forward. We can help you with your project from experimental data, through all analyses and to result report, at competitive rates.If you have any questions about how we can help you, please get in touch. We look forward to working with you!
