GrapeTree

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Introduction of GrapeTree

GrapeTree. GrapeTree is an interactive phylogenetic tree visualization analysis software. With GrapeTree, phylogenetic trees and meta-data can be flexibly operated and displayed. Such as filtering tree nodes, displaying subtrees, coloring different meta-data, selecting tree nodes based on meta-data, and adding new meta-data. The key point of GrapeTree is that in the case of a large number of samples, the vine can intuitively reflect and display the complex evolutionary relationship between the samples, which is convenient for researchers to analyze the data and build a beautiful evolutionary tree. GrapeTree is a stand-alone package for investigating phylogenetic trees plus associated metadata, and is also integrated into EnteroBase to facilitate cutting edge navigation of genomic relationships among bacterial pathogens.

GrapeTree visualization of genetic clusters.Fig 1. GrapeTree visualization of genetic clusters.(Zhemin, Z, et al. 2018)

Application Field

Pathogenic microorganism analysis.

Microorganism evolution analysis.

Disease Research.

The GrapeTree software tool can be used to quickly and easily perform microbial evolution analysis, but if you do not have enough time or manpower to study the usage of GrapeTree, you only need to provide the original data files, and CD Genomics can help you quickly obtain data analysis as a result, and draw a beautiful evolutionary tree for you. If you have any biological data needs, you can contact us and we will provide you with a one-stop data solution!

Reference

  1. Zhemin, Z, et al. GrapeTree: Visualization of core genomic relationships among 100,000 bacterial pathogens.[J]. Genome research, 2018. Sep; 28(9): 1395-1404.
* For Research Use Only. Not for use in diagnostic procedures.
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